NGS sequencing data


Link to the paper: Position-specific oxidation of miR-1 encodes cardiac hypertrophy

 

Spike-in

Sample Spike-in sequence Total read md5sum Fastq file
G UGGAAUGUAAAGAAGUAUGUAU
1,106,098
1f3fcea48c843f8f93265513d7aec5a4
 download
o8G* UGGAAUG*UAAAGAAGUAUGUAU
633,240
bb0f0b414ce2a91c8e837ed7ecdb2a46
 download

 

o8G-miSeq

Sample Tissue / cell-line Treatment Type Antibody Total read md5sum Fastq file
H9C2-1 H9c2 Mock miRNA-Seq - 40,477,341
9494fe748c8f7ce2d2ea98e639dc9ba9
 download
H9C2-2 H9c2 Mock miRNA-Seq - 29,291,869
8cb3e94d259008bb50c7074643573da4
 download
H9C2-1-IP H9c2 Mock o8G-miSeq 15A3 14,632,106
fc7d7d75cd5d828981c778869a16836b
 download
H9C2-2-IP H9c2 Mock o8G-miSeq 15A3 21,325,148
ee684572e8865d58222465b976817955
 download
Sample Tissue / cell-line Treatment Type Antibody Total read md5sum Fastq file
rCMC-cont Rat cardiomyocytes PBS miRNA-Seq - 12,009,720
760ec0d057bb7b0f1258bded040d3402
 download
rCMC-PE Rat cardiomyocytes PE miRNA-Seq - 14,302,225
a31902268fe91c6ce7dfab28c9f963a3
 download
rCMC-cont-IP Rat cardiomyocytes PBS o8G-miSeq 15A3 13,838,634
6c4ca6feaf522ad0fdd7fff699c96460
 download
rCMC-PE-IP Rat cardiomyocytes PE o8G-miSeq 15A3 18,074,575
4d08abe8da37ed7ceb097af8c58f8d72
 download
Sample Tissue / cell-line Treatment Type Antibody Total read md5sum Fastq file
rCMC-st Rat cardiomyocytes starvation + PBS miRNA-Seq -
10,751,035
0954a5f4bd573903da6a78d1eb294117
 download
rCMC-S-PE1 Rat cardiomyocytes starvation + PE miRNA-Seq -
10,545,531
465b3c96c7552c4846a24be9a72ccf87
 download
rCMC-S-PE2 Rat cardiomyocytes starvation + PE miRNA-Seq -
10,347,419
4faacd0aa18b370519e555a59c643abe
 download
rCMC-st-IP Rat cardiomyocytes starvation + PBS o8G-miSeq 15A3
7,626,854
5b293c537182e0d6635c7307c001e350
 download
rCMC-S-PE1-IP Rat cardiomyocytes starvation + PE o8G-miSeq 15A3
8,845,680
711ac15409d03149e29279640ad7fbe3
 download
rCMC-S-PE2-IP Rat cardiomyocytes starvation + PE o8G-miSeq 15A3
9,709,691
b837bfe4222f2d23232732f7fd98750c
 download
Sample Tissue / cell-line Treatment Type Antibody Total read md5sum Fastq file
H9C2-PE1 H9c2 PE miRNA-Seq - 20,057,224
9fcdf3e03c1772ba326243ee6f1741fb
 download
H9C2-PE2 H9c2 PE miRNA-Seq - 21,847,718
8507c0b7927155c6e74e2d4897a517da
 download
H9C2-PE1-IP H9c2 PE o8G-miSeq 15A3 21,448,422
bd2d479f464c205a56758cd96b8c1e0e
 download
H9C2-PE2-IP H9c2 PE o8G-miSeq 15A3 11,927,329
e97590a0ddc19643acb25ab0fbd3eb97
 download

 

RNA-Seq (mouse heart tissue)

Sample Tissue / cell-line Treatment Type Total read md5sum Fastq file
mHT-NT-A Mouse heart NT mRNA-Seq (Lexogen)
12,199,374
a3a5f7261b560d3e9e0d4f59ebd08482
 download
mHT-NT-B Mouse heart NT mRNA-Seq (Lexogen)
15,466,777
d8acf30ce7c0946e8bba34081f530b05
 download
mHT-NT-C Mouse heart NT mRNA-Seq (Lexogen)
19,835,968
0d941cc9afef8021c0484c93ee0410a2
 download
mHT-miR-1-7o8G-A Mouse heart miR-1:7o8G mRNA-Seq (Lexogen)
12,346,518
0a6767bc32f4ac44225028590d10dfe3
 download
mHT-miR-1-7o8G-B Mouse heart miR-1:7o8G mRNA-Seq (Lexogen)
14,706,316
aad6f9aaf1fa9daefdc81db04e671a83
 download
mHT-miR-1-7o8G-C Mouse heart miR-1:7o8G mRNA-Seq (Lexogen)
7,305,936
446b9bbcb017dc3b6bdee36c7cf74229
 download
Sample Tissue / cell-line Treatment Type Total read md5sum Fastq file
mHT-PBS1 Mouse heart PBS mRNA-Seq (Lexogen)
27,208,111
633278575184cdc3ae7f220afe2d29bb
 download
mHT-PBS2 Mouse heart PBS mRNA-Seq (Lexogen)
9,000,296
ac3a711266dec5aa9b919334e41bc4e0
 download
mHT-ISO1 Mouse heart ISO mRNA-Seq (Lexogen)
8,748,847
d76a7ca4ddb4060db412a2bf7732b4de
 download
mHT-ISO2 Mouse heart ISO mRNA-Seq (Lexogen)
11,875,049
db7a944776694ddfc938fd7c820635f0
 download
Sample Tissue / cell-line Treatment Type Total read md5sum Fastq file
mHT-ISO-anti-7oxo-TG(-) Mouse heart Anti-miR-1:7o8G TG(-) + ISO mRNA-Seq (Lexogen)
7,175,444
dfb92799f726230fcac785fe7a8d692b
 download
mHT-ISO-anti-7oxo-TG(+) Mouse heart Anti-miR-1:7o8G TG(+) + ISO mRNA-Seq (Lexogen)
6,038,498
c6671e839b2ef4ebaa082b90d69b577c
 download
 

RNA-Seq (H9c2 cell-line)

Sample Tissue / cell-line Treatment Type Total read md5sum Fastq file
H9C2-NT-N1 H9c2 NT-6pi TruSeq (NeoPrep) 29,826,474
6ed429513181da6993af8ab684d64207
 download
H9C2-NT-L1a H9c2 NT-6pi mRNA-Seq (Lexogen) 18,522,935
8f3eec164f926afbb754319d37fb6d6d
 download
H9C2-NT-L2y H9c2 NT-6pi mRNA-Seq (Lexogen) 18,447,904
8ee8c688aac936f71e5129f9babd395a
 download
H9C2-miR-1-2o8G-N1 H9c2 miR-1:2o8G TruSeq (NeoPrep) 21,597,624
bebbcd74f762d90407b6454d0376054f
 download
H9C2-miR-1-2o8G-L1a H9c2 miR-1:2o8G mRNA-Seq (Lexogen) 15,794,674
b2f66e33b5cb0942e593b32947096be7
 download
H9C2-miR-1-2o8G-L2y H9c2 miR-1:2o8G mRNA-Seq (Lexogen) 16,880,908
9ac658ed8e09cd5f08ed51ec07cf4fc5
 download
Sample Tissue / cell-line Treatment Type Total read md5sum Fastq file
H9C2-NT-N1 H9c2 NT-6pi TruSeq (NeoPrep) 29,826,474
dffa9796019630d67abe91b53c6781be
 download
H9C2-NT-L1a H9c2 NT-6pi mRNA-Seq (Lexogen) 18,522,935
b1362a996059ab7ef0b1edf90094232d
 download
H9C2-NT-L2y H9c2 NT-6pi mRNA-Seq (Lexogen) 18,447,904
4284c554bc12c85ed19c8e9982403a42
 download
H9C2-miR-1-3o8G-N1 H9c2 miR-1:3o8G TruSeq (NeoPrep) 39,665,362
34c526deee5e60eb912d12736b6a579b
 download
H9C2-miR-1-3o8G-L1a H9c2 miR-1:3o8G mRNA-Seq (Lexogen) 15,660,887
b711b7f6a78505c7fb7dfc532d3df59e
 download
H9C2-miR-1-3o8G-L2y H9c2 miR-1:3o8G mRNA-Seq (Lexogen) 18,812,523
b382478a66fb05cdfae989e6c9e1c30a
 download
Sample Tissue / cell-line Treatment Type Total read md5sum Fastq file
H9C2-NT-O1 H9c2 NT-6pi TruSeq (Omega Bioservices) 38,554,508
78439bee74bafe4c6517b127d8e9b256
 download
H9C2-NT-O2 H9c2 NT-6pi TruSeq (Omega Bioservices) 25,174,921
1f1c6ed75103a1f785ddbea964588681
 download
H9C2-NT-L1a H9c2 NT-6pi mRNA-Seq (Lexogen) 18,522,935
238dbf9bf74475c05869489fde7c7f58
 download
H9C2-NT-L2y H9c2 NT-6pi mRNA-Seq (Lexogen) 18,447,904
59ef69dfc9613d082506e36fc2f408e2
 download
H9C2-miR-1-7o8G-O1 H9c2 miR-1:7o8G TruSeq (Omega Bioservices) 28,267,283
5d5bd7922f5308758fac8271c0b223ac
 download
H9C2-miR-1-7o8G-O2 H9c2 miR-1:7o8G TruSeq (Omega Bioservices) 23,953,461
0415142bea24146ca395c76dc8a252b3
 download
H9C2-miR-1-7o8G-L1a H9c2 miR-1:7o8G mRNA-Seq (Lexogen) 17,831,138
0a07e972742297c0033ec9896ef51c90
 download
H9C2-miR-1-7o8G-L2y H9c2 miR-1:7o8G mRNA-Seq (Lexogen) 17,983,973
73ccfbaf595622cbc00144ed3c6358de
 download
Sample Tissue / cell-line Treatment Type Total read md5sum Fastq file
H9C2_cont H9c2 Anti-NT mRNA-Seq (Lexogen) 8,026,529
c2b22c8ceab32e7dc8a99de64a6d2c2a
 download
H9C2_Anti-7oxo H9c2 Anti-miR-1:7o8G mRNA-Seq (Lexogen) 8,026,529
d920c485b75dc06319f29c5b2bac8c94
 download
 

 

CLEAR-CLIP

Sample Tissue / cell-line Treatment Antibody Total read md5sum Fastq file
LT_PBS1_2A8 Mouse heart PBS 2A8
16,262,932
282b99c2fe8b08028fd26588ea61c46a
 download
LT_PBS1_2E12 Mouse heart PBS 2E12
14,672,015
eadc2db37819480412d44e4e29242f01
 download
LT_ISO6_2A8 Mouse heart ISO 2A8
20,641,105
af26ff87b5281f597d5ffd145d111e03
 download
LT_ISO6_2E12 Mouse heart ISO 2E12
24,889,285
60ab222f272efca40ebb40f0fb3947d1
 download

Python script

For o8G-miSeq : Mapping_miRNA.zip
For Spike-in : Mapping_spike-in.zip
For Spike-in (unique count) : Mapping_spike-in_unique.zip